Whole Exome sequencing for the 1000 Genomes Project - SRA

SRX103829: Whole Exome sequencing for the 1000 Genomes Project
8 ILLUMINA (Illumina HiSeq 2000) runs: 22.4M spots, 3.6G bases, 2.4Gb downloads

Design: Whole Exome sequencing for the 1000 Genomes Project via in-solution hybrid selection

Submitted by: Broad Institute (BI)

Study: Exome sequencing of (KHV) Kinh in Ho Chi minh City, Vietnam HapMap population

Sample: Coriell HG01862

Library:

Name: Catch-88592

Instrument: Illumina HiSeq 2000

Strategy: WXS

Source: GENOMIC

Selection: Hybrid Selection

Layout: PAIRED

Spot descriptor:

1 forward barcode

Group tag	Basecalls
tagged_52	AAGGATGT

85 reverse

BI GSSR sample ID: 120495.0 
BI GSSR sample LSID: broadinstitute.org:bsp.prod.sample:25MRT 
BI project name: C469 
BI work request ID: 26159 

Name	Step	Program	Version
base caller	2011-09-12 18:29:48.0	GAPipeline	RTA1.12.4.2

Runs: 8 runs, 22.4M spots, 3.6G bases, 2.4Gb

Run	# of Spots	# of Bases	Size	Published
SRR359369	2,864,740	458.4M	310.9Mb	2011-10-29
SRR359371	2,776,191	444.2M	302.6Mb	2011-10-29
SRR359374	2,769,688	443.2M	302.9Mb	2011-10-29
SRR359376	2,825,790	452.1M	305.8Mb	2011-10-29
SRR359379	2,801,280	448.2M	303Mb	2011-10-29
SRR359391	2,852,843	456.5M	311.9Mb	2011-10-29
SRR359401	2,813,385	450.1M	307.7Mb	2011-10-29
SRR359402	2,692,302	430.8M	291.3Mb	2011-10-29

Supplemental Content

PREDICTED: Homo sapiens phosphoserine phosphatase (PSPH), transcript variant X8,...
PREDICTED: Homo sapiens phosphoserine phosphatase (PSPH), transcript variant X8, mRNA
gi|2217367949|ref|XM_047420650.1|

Nucleotide
PREDICTED: Equus asinus FXYD domain containing ion transport regulator 1 (FXYD1)...
PREDICTED: Equus asinus FXYD domain containing ion transport regulator 1 (FXYD1), transcript variant X2, mRNA
gi|2124491093|ref|XM_044759514.1|

Nucleotide
Gdi1 protein, partial [Tricholoma fulvocastaneum]
Gdi1 protein, partial [Tricholoma fulvocastaneum]
gi|2288963987|gb|UVH37851.1|

Protein
Gdi1 protein, partial [Tricholoma sp. 24 XXD-2021]
Gdi1 protein, partial [Tricholoma sp. 24 XXD-2021]
gi|2288963989|gb|UVH37852.1|

Protein
Gdi1 protein, partial [Tricholoma sp. 30 XXD-2021]
Gdi1 protein, partial [Tricholoma sp. 30 XXD-2021]
gi|2288963993|gb|UVH37854.1|

Protein

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SRA